Graduate Student, Computational Biology
BS, Yale University
Faculty Mentor: Bud Mishra, Ph.D.
My previous experience includes work in Bioinformatics, Neuronal modeling, and Computational Chemistry. I believe in the promise of mathematical modeling as a means of illuminating the logic behind the ways cells and bodies are wired. In particular, I think variation of all sorts, from differentiated genotypes to stochastic biochemical processes leading to differentiated behaviors, are unbelievably cool.
Application of signaling games to molecular biology
Data analysis, systems modeling
, Sundstrom, A., Massey, S.E., Mishra, B.. What can information-asymmetric games tell us about the context of Crick's 'Frozen Accident'? J. R. Soc. Interface. 2013 Aug 6;10(88):20130614. Cited in Pubmed; PMID 23985735. doi: 10.1098/rsif.2013.0614
. PMCID: PMC3785830.
, Klippel LC, Hossain MS, Ramakrishnan N, Mishra B. Discovering the Ebb and Flow of Ideas from Text Corpora. IEEE Computer. 2012 Feb;45(2):73-77. doi: 10.1109/MC.2012.52
*, Rozowsky J*, Yip K*, Luchovsky L, Bjonrson R, Zhong G, Zhao Z, Gerstein M. ACT: Aggregation and Correlation Toolbox for Analyses of Genome Tracks. Bioinformatics. 2011 Feb 23;Cited in Pubmed; PMID 21349863. doi: 10.1093/bioinformatics/btr092
The 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature. 2010 Oct 28;467(7319):1061-73. Cited in Pubmed; PMID 20981092. doi: 10.1038/nature09534
Seringhaus M, Rozowsky J, Royce T, Nagalakshmi U, Jee J
, Snyder M, Gerstein M. Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays. BMC Genomics. 2008 Dec 31;9:635. Cited in Pubmed; PMID 19117516. doi: 10.1186/1471-2164-9-635
. PMCID: 16774215.
, Tao FM. Reaction mechanisms and kinetics for the oxidations of dimethyl sulfide, dimethyl disulfide, and methyl mercaptan by the nitrate radical. J Phys Chem A. 2006 Jun 22;110(24):7682-9. Cited in Pubmed; PMID 16774215. doi: 10.1021/jp0566717